The only thing I could see being an issue is if you're using a deck that has a flat, almost laminated style finish. That might make certain things difficult.
Keep in mind, a lot of card magic was invented when cards were just essentially thick paper.
Also keep in mind that there's very little practical difference between a deck of Bicycle Rider Backs from Target and any of the more expensive custom decks. Unless there have been some dramatic changes in the last four years since I left the magic industry, most of these decks are printed on the same machines and the differences are largely psychosomatic.
Though credit where credit is due, I have been seeing some really impressive tuck case designs lately.